Research software

SEEG analysis, simplified.

From raw scans to precise electrode localization.
The complete SEEG workflow in one tool.

Zero scripting required
Data stays local
Free for research
100% Automated coregistration
2 clicks Per electrode reconstruction
30 min Per patient, imaging included
BIDS Compliant export standard

Everything a clinician needs
to work with implanted brains.

Project file

One .json per patient: image paths, electrodes, markers and camera positions in a single portable file.

Save & history

Clicking the logo (top-left) prompts to save and returns to the project selection menu. Clicking the (top-right) prompts to save and closes the application. Recent projects are listed at startup, sorted by last modified.

Two opening modes

Edit mode: full access. Visualization only: navigate and export, no modifications.

01

Import &
Coregistration

Load any combination of MRI 1, CT, MRI 2, PET, ictal and inter-ictal SPECT and fMRI. NeuXelec aligns every modality to the MRI 1 reference automatically, and no alignment counts until you have reviewed it on screen. No manual landmark picking, no command line.

  • NIfTI, DICOM & MGZ supported
  • ANTs registration, rigid only for the CT
  • Side-by-side review with manual correction
  • Automatic brain mask generation
  • One-click SISCOM computation
  • fMRI read as a statistical map or a scanner colour fusion
Explore in detail
T1 MRI CT PET
Aligned ✓
02

Electrode
Reconstruction

Click two contacts on the post-implant CT. NeuXelec reconstructs the full electrode trajectory and assigns precise coordinates to every contact. Load the NeuroInspire plan and it also proposes the name, the hemisphere and the reference of the nearest planned trajectory. Minutes, not hours.

  • Simultaneous axial, coronal & sagittal views
  • Two-point automatic trajectory estimation
  • All Dixi references, plus your own custom electrodes
  • NeuroInspire plan import, planned against implanted
  • Per-electrode color & hemisphere labeling
  • Export to BIDS, TXT, CSV, TSV, JSON, Cartool ELS & iELVIS
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SEEG electrodes in 3D
03

Oblique &
Parcellation

Reslice any volume along the electrode shaft for a true contact-aligned view. Overlay CT, MRI, PET, SPECT, SISCOM and fMRI simultaneously. A live table names each contact with the SEEG2parc measure, the dominant region of the weighted cube around it.

  • On-the-fly oblique plane computation
  • Multi-modal opacity blending
  • FreeSurfer & custom atlas support
  • SEEG2parc labelling, identical to the BIDS export
  • White matter refined gyrus by gyrus with wmparc
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Oblique + Parcellation Oblique + SISCOM Oblique + PET Oblique + CT
04

3D View
& Export

Visualize all implanted electrodes on the patient's cortical surface. Navigate coronal, axial and sagittal slices simultaneously, then normalize to MNI space for group-level analysis.

  • Hardware-accelerated 3D rendering (PyVista / VTK)
  • Coronal, axial & sagittal slice navigation
  • PET, SPECT, SISCOM & fMRI overlays, cortex only if needed
  • MNI152 normalization & coordinate export
  • Defacing of exported images for sharing
  • Publication-ready screenshots & GIF export
Explore in detail
Pial surface rotation Electrodes on brain MNI atlas electrodes